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Trevor on the beach
DR. TREVOR M. CICKOVSKI (CV (Updated Sept 2011))
ASSISTANT PROFESSOR
 ECKERD COLLEGE (site)
 DEPARTMENT OF COMPUTER SCIENCE (site)
You may contact me at:
               
       Tritons

ECKERD COLLEGE
115C SHEEN SCIENCE CENTER
ST. PETERSBURG, FL 33711
OFFICE PHONE: (727) 864-8272
E-MAIL: cickovtm@eckerd.edu
Papers Published/Accepted
1. A Case Study on Developing a Classroom Web Application Using Behavior-Driven Development. A. Vance and T. Cickovski, submitted to AJUR, 2012.
2. The Mechanisms of Microtubule Catastrophe and Rescue: Implications From Analysis of a Dimer-Scale Computational Model G. Margolin, I. V. Gregoretti, T. Cickovski, C. Li, W. Shi, M. S. Alber and H. V. Goodson, M. Biol. Cell, 23(4):642-656, 2012.
3. MDLab: A Molecular Dynamics Simulation Prototyping Environment T. Cickovski, S. Chatterjee, J. Wenger, C. R. Sweet and J. A. Izaguirre, J. Comput. Chem.,31(7):1345-1356, 2010.
 4. From Genes To Organisms Via The Cell: A Problem Solving Environment For Multicellular Development  T. Cickovski, K. Aras, M. Swat, R. M. H. Merks, T. Glimm, H. G. E. Hentschel, M. S. Alber, J. A. Glazier, S. A. Newman and J. A. Izaguirre, CISE,  9(4):50-60, 2007.
 5. MDL, A Domain-Specific Language For Molecular Dynamics  T. Cickovski, C. Sweet and J. A. Izaguirre, Proceedings of IEEE 40th ANSS, Norfolk, VA, March 2007.
6. A Framework for Three-Dimensional Simulation of Morphogenesis  T. Cickovski, C. Huang, R. Chaturvedi, T. Glimm, H. G. E. Hentschel, M. S. Alber, J. A. Glazier, S. A. Newman, J. A. Izaguirre :  ACM TCBB 2(4):273-288,  2005.
7. CompuCell, A Multi-Model Framework For Simulations Of Morphogenesis  J. A. Izaguirre, R. Chaturvedi, C. Huang, T. Cickovski, J. Coffland, G. Thomas, G. Forgacs, M. S. Alber, S. A. Newman, J. A. Glazier :  Bioinformatics 20(7):1129-1137, 2004.
8. ProtoMol, An Object-Oriented Framework For Prototyping Novel Algorithms For Molecular Dynamics  T. Matthey, T. Cickovski, S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder, T. Slabach, J. A. Izaguirre :  ACM TOMS, 20(3):237-265, 2004.
9. Multi-Model Simulations of Chicken Limb Morphogenesis  R. Chaturvedi, J. A. Izaguirre, C. Huang, T. Cickovski, P. Virtue, G. Thomas, G. Forgacs, M. S. Alber, S. A. Newman, and J. A. Glazier : Springer Verlag LNCS 2659, ICCS 2003, International conference Melbourne, Australia and St. Petersburg, Russia, Part II, pp 39-49, June 2003.		 Courses

Spring 2012
 CS 143M - Intro to Computer Science
CS 143ML - Intro To Computer Science Lab
CS 221N - Data Structures
CS 415 - Computer Networks
CS 410 - CS Seminar

Awards and Honors
2001 - Inducted into Tau Beta Pi
2004 - Inducted into Upsilon Pi Epsilon
2006 - Kaneb Award for Excellence in Teaching

Highest Degree Earned
Ph.D. University of Notre Dame, Computer Science and Engineering, 2008

Research Projects
MDLab  A molecular dynamics simulation prototyping environment
CompuCell3D A 3D multi-model software framework for morphogenesis
ProtoMol An extensible framework for simulations of molecular dynamics
Past Research Journals 
Conference Presentations

 1. Midwest Numerical Analysis Day (presentation), May 2003 
2. Biocomplexity IV (poster), May 2003
3. Biocomplexity VI (poster), May 2004
4. SIAM (presentation), February 2005, SESSION CHAIR  
5. Biocomplexity VIII (poster), October 2005
6. Midwest Molecular Dynamics Workshop (discussion), November 2005
7. Midwest Society for Programming Languages and Systems Meeting (presentation), April 2006   PPT
8. ALife X, (poster and tutorial), June 2006
9. Helpful Hints for TAs in CSE (panelist), August 2006
10. Society for Advancement of Native Americans and Chicanos in Science (recruiter), October 2006
11. IEEE 40th Annual Simulation Symposium, March 2007
12. IMA Classical and Quantum Approaches in Molecular Modeling (presentation), July 2007
13. CompuCell3D Workshop (instructor), August 2007
14. Inaugural Florida Undergraduate Research Symposium (poster), March 2011
15. Second Annual Florida Undergraduate Research Symposium (poster), March 2012
 Technical Reports
1. Design Patterns For Generic Object-Oriented Scientific Software  T. Cickovski, T. Matthey and J. A. Izaguirre, Notre Dame TR 2004-29, November 2004.
2. Empirical Analysis of Design Patterns in Scientific Application  K. Aras, T. Cickovski and J. A. Izaguirre, Notre Dame Technical Report 2005-08, May 2005.
3. Simulation of Chicken Limb Growth With Irregular Domain Shape  K. Aras, T. Cickovski, D. Cieslak, C. Huang and J. A. Izaguirre, Notre Dame Technical Report 2005-09, July 2005.
4. Interactive Molecular Dynamics  D. Brandtner, T. Cickovski and J. A. Izaguirre, Notre Dame Technical Report 2005-11, July 2005.
5. Molecular Dynamics Language (MDL)  C. B. B. Yau, T. Cickovski and J. A. Izaguirre, Notre Dame Technical Report 2005-13, August 2005.


In memory of Remo DiGirolamo, my high school classmate.  You will not be forgotten.